MotoGP Qualifying Results from the Malaysian GP at Sepang, Malaysia:
| Pos. | Rider | Team | Bike | KM/H | Time | Diff. |
| 1 | Andrea DOVIZIOSO | Ducati Team | Ducati | 295.4 | 2’11.485 | – |
| 2 | Valentino ROSSI | Movistar Yamaha MotoGP | Yamaha | 296.5 | 2’11.731 | 0.246 |
| 3 | Jorge LORENZO | Movistar Yamaha MotoGP | Yamaha | 303.2 | 2’11.787 | 0.302 |
| 4 | Marc MARQUEZ | Repsol Honda Team | Honda | 302.7 | 2’11.874 | 0.389 |
| 5 | Cal CRUTCHLOW | LCR Honda | Honda | 304.3 | 2’12.558 | 1.073 |
| 6 | Andrea IANNONE | Ducati Team | Ducati | 282.4 | 2’12.598 | 1.113 |
| 7 | Aleix ESPARGARO | Team SUZUKI ECSTAR | Suzuki | 303.4 | 2’12.869 | 1.384 |
| 8 | Maverick VIÑALES | Team SUZUKI ECSTAR | Suzuki | 295.5 | 2’12.981 | 1.496 |
| 9 | Alvaro BAUTISTA | Aprilia Racing Team Gresini | Aprilia | 294.1 | 2’13.325 | 1.840 |
| 10 | Loris BAZ | Avintia Racing | Ducati | 294.9 | 2’13.452 | 1.967 |
| 11 | Pol ESPARGARO | Monster Yamaha Tech 3 | Yamaha | 284.7 | 2’13.707 | 2.222 |
| 12 | Hector BARBERA | Avintia Racing | Ducati | 290.5 | 2’13.973 | 2.488 |
| 13 | Bradley SMITH | Monster Yamaha Tech 3 | Yamaha | 302.5 | 2’12.898 | 1.307 |
| 14 | Jack MILLER | Estrella Galicia 0,0 Marc VDS | Honda | 302.2 | 2’12.907 | 1.316 |
| 15 | Danilo PETRUCCI | OCTO Pramac Yakhnich | Ducati | 297.3 | 2’13.776 | 2.185 |
| 16 | Stefan BRADL | Aprilia Racing Team Gresini | Aprilia | 292.2 | 2’13.850 | 2.259 |
| 17 | Hiroshi AOYAMA | Repsol Honda Team | Honda | 291.4 | 2’14.179 | 2.588 |
| 18 | Scott REDDING | OCTO Pramac Yakhnich | Ducati | 294.5 | 2’14.433 | 2.842 |
| 19 | Eugene LAVERTY | Pull & Bear Aspar Team | Ducati | 282.4 | 2’14.769 | 3.178 |
| 20 | Yonny HERNANDEZ | Pull & Bear Aspar Team | Ducati | 291.8 | 2’14.786 | 3.195 |
| 21 | Tito RABAT | Estrella Galicia 0,0 Marc VDS | Honda | 290.0 | 2’15.894 | 4.303 |
Source: MotoGP; Photo: © 2016 Scott Jones / Photo.GP – All Rights Reserved
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